PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01910.1.p
Common NameEUGRSUZ_F01910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 236aa    MW: 26193.7 Da    PI: 9.8002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-065274123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Eucgr.F01910.1.p 52 FVCEICNKGFQRDQNLQLHRRGH 74
                      89*******************88 PP

2zf-C2H217.98.5e-06130152123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s+ k H+rt+
  Eucgr.F01910.1.p 130 WKCERCSKKYAVQSDWKAHMRTC 152
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-65174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-85174No hitNo description
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM003558595125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-6118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-8125151No hitNo description
SMARTSM0035570130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVEMPNPSSQ EVSSSDLSAP PAKKKRSLPG MPDPEAEVIA LSPKTLLATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWRL RQRDSNAEPP RKKVYVCPEP GCVHHSPARA LGDLTGIKKH  120
FCRKHGEKKW KCERCSKKYA VQSDWKAHMR TCGTREYKCD CGMLFSRRDS FVTHRAFCDA  180
LAEESSRAQN NNSVQDEQNA RRSGSAAAAA SASSPPPPPL TPSTTVVSPV LSLQSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061336.11e-176PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9SCQ61e-109IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A059BQ841e-176A0A059BQ84_EUCGR; Uncharacterized protein (Fragment)
STRINGVIT_18s0001g12220.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2